The ArraySaver repair systems utilize multiple wavelength laser technology to repair defects in flat panel displays during and after array fabrication. The systems can use defect data files downloaded from the ArrayChecker test systems or other test and inspection systems to automatically position the panel for repair, thereby eliminating the time spent by operators locating defects. The ArraySaver system includes a high-precision material handling platform and a user-friendly graphical interface allowing for high throughput. An intuitive graphical user interface supports semi-automated setup of repair programs for common types of defects so that repairs can be executed rapidly and accurately.